J3_6YTF_002
3D structure
- PDB id
- 6YTF (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Acinetobacter baumannii ribosome-tigecycline complex - 30S subunit head
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 3 Å
Loop
- Sequence
- UGGA*UAC*GGAA
- Length
- 11 nucleotides
- Bulged bases
- None detected
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- J3_6YTF_002 not in the Motif Atlas
- Homologous match to J3_4LFB_003
- Geometric discrepancy: 0.1302
- The information below is about J3_4LFB_003
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- J3_52655.4
- Basepair signature
- cWW-tSH-cWW-F-cWW-cWW
- Number of instances in this motif group
- 4
Unit IDs
6YTF|1|3|U|940
6YTF|1|3|G|941
6YTF|1|3|G|942
6YTF|1|3|A|943
*
6YTF|1|3|U|1232
6YTF|1|3|A|1233
6YTF|1|3|C|1234
*
6YTF|1|3|G|1334
6YTF|1|3|G|1335
6YTF|1|3|A|1336
6YTF|1|3|A|1337
Current chains
- Chain 3
- 16S ribosomal RNA
Nearby chains
- Chain 7
- Transfer RNA; tRNA
- Chain j
- 30S ribosomal protein S9
- Chain n
- 30S ribosomal protein S13
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