J3_6YTF_009
3D structure
- PDB id
- 6YTF (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Acinetobacter baumannii ribosome-tigecycline complex - 30S subunit head
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 3 Å
Loop
- Sequence
- CUUGACAU*ACAG*CUUACG
- Length
- 18 nucleotides
- Bulged bases
- 6YTF|1|3|U|1209, 6YTF|1|3|C|1211
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- J3_6YTF_009 not in the Motif Atlas
- Homologous match to J3_4LFB_016
- Geometric discrepancy: 0.1619
- The information below is about J3_4LFB_016
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- J3_76475.2
- Basepair signature
- cWW-tWH-F-tHS-cWW-cWW-F-cWS-cWS-cWW
- Number of instances in this motif group
- 2
Unit IDs
6YTF|1|3|C|987
6YTF|1|3|U|988
6YTF|1|3|U|989
6YTF|1|3|G|990
6YTF|1|3|A|991
6YTF|1|3|C|992
6YTF|1|3|A|993
6YTF|1|3|U|994
*
6YTF|1|3|A|1041
6YTF|1|3|C|1042
6YTF|1|3|A|1043
6YTF|1|3|G|1044
*
6YTF|1|3|C|1207
6YTF|1|3|U|1208
6YTF|1|3|U|1209
6YTF|1|3|A|1210
6YTF|1|3|C|1211
6YTF|1|3|G|1212
Current chains
- Chain 3
- 16S ribosomal RNA
Nearby chains
- Chain o
- 30S ribosomal protein S14
Coloring options: