J3_6ZCE_009
3D structure
- PDB id
- 6ZCE (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Structure of a yeast ABCE1-bound 43S pre-initiation complex
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 5.3 Å
Loop
- Sequence
- CCAGAC*GGGUG*UUAGACG
- Length
- 18 nucleotides
- Bulged bases
- 6ZCE|1|A|G|1445, 6ZCE|1|A|C|1447
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- J3_6ZCE_009 not in the Motif Atlas
- Homologous match to J3_8C3A_041
- Geometric discrepancy: 0.206
- The information below is about J3_8C3A_041
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- J3_23728.1
- Basepair signature
- cWW-tWH-F-F-tHS-cWW-cWW-cWW-F
- Number of instances in this motif group
- 2
Unit IDs
6ZCE|1|A|C|1215
6ZCE|1|A|C|1216
6ZCE|1|A|A|1217
6ZCE|1|A|G|1218
6ZCE|1|A|A|1219
6ZCE|1|A|C|1220
*
6ZCE|1|A|G|1263
6ZCE|1|A|G|1264
6ZCE|1|A|G|1265
6ZCE|1|A|U|1266
6ZCE|1|A|G|1267
*
6ZCE|1|A|U|1442
6ZCE|1|A|U|1443
6ZCE|1|A|A|1444
6ZCE|1|A|G|1445
6ZCE|1|A|A|1446
6ZCE|1|A|C|1447
6ZCE|1|A|G|1448
Current chains
- Chain A
- 18S ribosomal RNA (1719-MER)
Nearby chains
- Chain L
- 40S ribosomal protein S10-A
- Chain e
- 40S ribosomal protein S29-A
- Chain g
- Ubiquitin-40S ribosomal protein S31
- Chain s
- Eukaryotic translation initiation factor 3 subunit J
- Chain t
- Eukaryotic translation initiation factor 3 subunit J
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