J3_6ZCE_014

3D structure

PDB id

6ZCE (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of a yeast ABCE1-bound 43S pre-initiation complex

Experimental method

ELECTRON MICROSCOPY

Resolution

5.3 Å

Loop

Sequence

AGAUUAAG*CGCGCAAAU*AGU

Length

20 nucleotides

Bulged bases

6ZCE|1|A|A|46, 6ZCE|1|A|A|47

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J3_6ZCE_014 not in the Motif Atlas

Homologous match to J3_8C3A_083

Geometric discrepancy: 0.1016

The information below is about J3_8C3A_083

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J3_46317.2

Basepair signature

cWW-F-tWH-cSW-cWW-cWW-F-F-cSW-cWW

Number of instances in this motif group

5

Unit IDs

6ZCE|1|A|A|41
6ZCE|1|A|G|42
6ZCE|1|A|A|43
6ZCE|1|A|U|44
6ZCE|1|A|U|45
6ZCE|1|A|A|46
6ZCE|1|A|A|47
6ZCE|1|A|G|48
*
6ZCE|1|A|C|431
6ZCE|1|A|G|432
6ZCE|1|A|C|433
6ZCE|1|A|G|434
6ZCE|1|A|C|435
6ZCE|1|A|A|436
6ZCE|1|A|A|437
6ZCE|1|A|A|438
6ZCE|1|A|U|439
*
6ZCE|1|A|A|464
6ZCE|1|A|G|465
6ZCE|1|A|U|466

Current chains

Chain A

18S ribosomal RNA (1719-MER)

Nearby chains

Chain Y

40S ribosomal protein S23-A

Chain k

Translation initiation factor RLI1