J3_6ZN5_005
3D structure
- PDB id
- 6ZN5 (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- SARS-CoV-2 Nsp1 bound to a pre-40S-like ribosome complex - state 2
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 3.2 Å
Loop
- Sequence
- CCAG*CCAGUAA*UGAUUAAG
- Length
- 19 nucleotides
- Bulged bases
- None detected
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- J3_6ZN5_005 not in the Motif Atlas
- Homologous match to J3_4V88_035
- Geometric discrepancy: 0.1016
- The information below is about J3_4V88_035
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- J3_25303.1
- Basepair signature
- cWW-tSH-tHW-cSH-cSS-tHH-cSS-tWW-F-tHS-cWW-cWW
- Number of instances in this motif group
- 5
Unit IDs
6ZN5|1|2|C|1218
6ZN5|1|2|C|1219
6ZN5|1|2|A|1220
6ZN5|1|2|G|1221
*
6ZN5|1|2|C|1645
6ZN5|1|2|C|1646
6ZN5|1|2|A|1647
6ZN5|1|2|G|1648
6ZN5|1|2|U|1649
6ZN5|1|2|A|1650
6ZN5|1|2|A|1651
*
6ZN5|1|2|U|1673
6ZN5|1|2|G|1674
6ZN5|1|2|A|1675
6ZN5|1|2|U|1676
6ZN5|1|2|U|1677
6ZN5|1|2|A|1678
6ZN5|1|2|A|1679
6ZN5|1|2|G|1680
Current chains
- Chain 2
- 18S ribosomal RNA
Nearby chains
- Chain K
- 40S ribosomal protein S5
- Chain R
- 40S ribosomal protein S16
- Chain d
- 40S ribosomal protein S28
Coloring options: