J3_6ZOL_001

3D structure

PDB id

6ZOL (explore in PDB, NAKB, or RNA 3D Hub)

Description

SARS-CoV-2-Nsp1-40S complex, focused on head

Experimental method

ELECTRON MICROSCOPY

Resolution

2.8 Å

Loop

Sequence

CCAG*CCAGUAA*UGAUUAAG

Length

19 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J3_6ZOL_001 not in the Motif Atlas

Homologous match to J3_4V88_035

Geometric discrepancy: 0.1149

The information below is about J3_4V88_035

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J3_25303.1

Basepair signature

cWW-tSH-tHW-cSH-cSS-tHH-cSS-tWW-F-tHS-cWW-cWW

Number of instances in this motif group

5

Unit IDs

6ZOL|1|2|C|1218
6ZOL|1|2|C|1219
6ZOL|1|2|A|1220
6ZOL|1|2|G|1221
*
6ZOL|1|2|C|1645
6ZOL|1|2|C|1646
6ZOL|1|2|A|1647
6ZOL|1|2|G|1648
6ZOL|1|2|U|1649
6ZOL|1|2|A|1650
6ZOL|1|2|A|1651
*
6ZOL|1|2|U|1673
6ZOL|1|2|G|1674
6ZOL|1|2|A|1675
6ZOL|1|2|U|1676
6ZOL|1|2|U|1677
6ZOL|1|2|A|1678
6ZOL|1|2|A|1679
6ZOL|1|2|G|1680

Current chains

Chain 2

18S ribosomal RNA

Nearby chains

Chain F

40S ribosomal protein S5

Chain Q

40S ribosomal protein S16

Chain c

40S ribosomal protein S28