J3_6ZQE_007

3D structure

PDB id

6ZQE (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo-EM structure of the 90S pre-ribosome from Saccharomyces cerevisiae, state Dis-A (Poly-Ala)

Experimental method

ELECTRON MICROSCOPY

Resolution

7.1 Å

Loop

Sequence

UGGA*UAC*GGAA

Length

11 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J3_6ZQE_007 not in the Motif Atlas

Homologous match to J3_8C3A_039

Geometric discrepancy: 0.1926

The information below is about J3_8C3A_039

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J3_52655.3

Basepair signature

cWW-tSH-cWW-F-cWW-cWW

Number of instances in this motif group

4

Unit IDs

6ZQE|1|D3|U|1168
6ZQE|1|D3|G|1169
6ZQE|1|D3|G|1170
6ZQE|1|D3|A|1171
*
6ZQE|1|D3|U|1468
6ZQE|1|D3|A|1469
6ZQE|1|D3|C|1470
*
6ZQE|1|D3|G|1574
6ZQE|1|D3|G|1575
6ZQE|1|D3|A|1576
6ZQE|1|D3|A|1577

Current chains

Chain D3

18S rRNA

Nearby chains

Chain DT

40S ribosomal protein S19-A

Chain JG

Ribosomal RNA small subunit methyltransferase NEP1