J3_6ZQF_003

3D structure

PDB id

6ZQF (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo-EM structure of the 90S pre-ribosome from Saccharomyces cerevisiae, state Dis-B (Poly-Ala)

Experimental method

ELECTRON MICROSCOPY

Resolution

4.9 Å

Loop

Sequence

AGAG*CAG*UCGAAU

Length

13 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J3_6ZQF_003 not in the Motif Atlas

Homologous match to J3_4V88_032

Geometric discrepancy: 0.0868

The information below is about J3_4V88_032

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J3_54972.1

Basepair signature

cWW-tWW-F-cWW-F-tHS-F-cWW

Number of instances in this motif group

2

Unit IDs

6ZQF|1|D3|A|760
6ZQF|1|D3|G|761
6ZQF|1|D3|A|762
6ZQF|1|D3|G|763
*
6ZQF|1|D3|C|773
6ZQF|1|D3|A|774
6ZQF|1|D3|G|775
*
6ZQF|1|D3|U|785
6ZQF|1|D3|C|786
6ZQF|1|D3|G|787
6ZQF|1|D3|A|788
6ZQF|1|D3|A|789
6ZQF|1|D3|U|790

Current chains

Chain D3

18S rRNA

Nearby chains

Chain DE

40S ribosomal protein S4-A

Chain DJ

40S ribosomal protein S9-A

Chain DY

40S ribosomal protein S24-A