J3_6ZU5_014

3D structure

PDB id

6ZU5 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of the Paranosema locustae ribosome in complex with Lso2

Experimental method

ELECTRON MICROSCOPY

Resolution

2.9 Å

Loop

Sequence

UAGC*GUU*ACUGACA

Length

14 nucleotides

Bulged bases

6ZU5|1|L50|A|2278, 6ZU5|1|L50|G|2279

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J3_6ZU5_014 not in the Motif Atlas

Homologous match to J3_5TBW_014

Geometric discrepancy: 0.1039

The information below is about J3_5TBW_014

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J3_98597.1

Basepair signature

cWW-tWW-cHW-tSH-cWW-tSS-F-cSS-cWW

Number of instances in this motif group

2

Unit IDs

6ZU5|1|L50|U|2277
6ZU5|1|L50|A|2278
6ZU5|1|L50|G|2279
6ZU5|1|L50|C|2280
*
6ZU5|1|L50|G|2305
6ZU5|1|L50|U|2306
6ZU5|1|L50|U|2307
*
6ZU5|1|L50|A|2321
6ZU5|1|L50|C|2322
6ZU5|1|L50|U|2323
6ZU5|1|L50|G|2324
6ZU5|1|L50|A|2325
6ZU5|1|L50|C|2326
6ZU5|1|L50|A|2327

Current chains

Chain L50

25S rRNA

Nearby chains

Chain LB0

uL3

Chain LO0

uL13

Chain LV0

uL14