J3_6ZU5_032

3D structure

PDB id

6ZU5 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of the Paranosema locustae ribosome in complex with Lso2

Experimental method

ELECTRON MICROSCOPY

Resolution

2.9 Å

Loop

Sequence

CGAAC*GGCCACAGAG*CGUAG

Length

20 nucleotides

Bulged bases

6ZU5|1|L50|C|271

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J3_6ZU5_032 not in the Motif Atlas

Geometric match to J3_8VTW_041

Geometric discrepancy: 0.0886

The information below is about J3_8VTW_041

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J3_46299.1

Basepair signature

cWW-F-F-F-cHH-cWW-tHS-F-cWW-cSW-tHS-cWW

Number of instances in this motif group

3

Unit IDs

6ZU5|1|L50|C|247
6ZU5|1|L50|G|248
6ZU5|1|L50|A|249
6ZU5|1|L50|A|250
6ZU5|1|L50|C|251
*
6ZU5|1|L50|G|266
6ZU5|1|L50|G|267
6ZU5|1|L50|C|268
6ZU5|1|L50|C|269
6ZU5|1|L50|A|270
6ZU5|1|L50|C|271
6ZU5|1|L50|A|272
6ZU5|1|L50|G|273
6ZU5|1|L50|A|274
6ZU5|1|L50|G|275
*
6ZU5|1|L50|C|287
6ZU5|1|L50|G|288
6ZU5|1|L50|U|289
6ZU5|1|L50|A|290
6ZU5|1|L50|G|291

Current chains

Chain L50

25S rRNA

Nearby chains

Chain LC0

uL4

Chain LY0

uL24