J3_6ZU9_009

3D structure

PDB id

6ZU9 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of a yeast ABCE1-bound 48S initiation complex

Experimental method

ELECTRON MICROSCOPY

Resolution

6.2 Å

Loop

Sequence

CCAGAC*GGGUG*UUAGACG

Length

18 nucleotides

Bulged bases

6ZU9|1|2|A|1217, 6ZU9|1|2|G|1445

QA status

Unknown status

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J3_6ZU9_009 not in the Motif Atlas

Homologous match to J3_4V88_038

Geometric discrepancy: 0.1456

The information below is about J3_4V88_038

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J3_75993.1

Basepair signature

cWW-tWH-F-F-tHS-cWW-cWW-cWW-F

Number of instances in this motif group

2

Unit IDs

6ZU9|1|2|C|1215
6ZU9|1|2|C|1216
6ZU9|1|2|A|1217
6ZU9|1|2|G|1218
6ZU9|1|2|A|1219
6ZU9|1|2|C|1220
*
6ZU9|1|2|G|1263
6ZU9|1|2|G|1264
6ZU9|1|2|G|1265
6ZU9|1|2|U|1266
6ZU9|1|2|G|1267
*
6ZU9|1|2|U|1442
6ZU9|1|2|U|1443
6ZU9|1|2|A|1444
6ZU9|1|2|G|1445
6ZU9|1|2|A|1446
6ZU9|1|2|C|1447
6ZU9|1|2|G|1448

Current chains

Chain 2

18S ribosomal RNA

Nearby chains

Chain D

40S ribosomal protein S10-A

Chain N

40S ribosomal protein S29-A

Chain O

Ubiquitin-40S ribosomal protein S31