J3_6ZU9_011
3D structure
- PDB id
- 6ZU9 (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Structure of a yeast ABCE1-bound 48S initiation complex
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 6.2 Å
Loop
- Sequence
- UG*UGUC*GAUAA
- Length
- 11 nucleotides
- Bulged bases
- None detected
- QA status
- Unknown status
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- J3_6ZU9_011 not in the Motif Atlas
- Geometric match to J3_4V88_082
- Geometric discrepancy: 0.163
- The information below is about J3_4V88_082
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- J3_76043.1
- Basepair signature
- cWW-F-F-F-F-tSS-cWW-cWW
- Number of instances in this motif group
- 3
Unit IDs
6ZU9|1|2|U|1293
6ZU9|1|2|G|1294
*
6ZU9|1|2|U|1303
6ZU9|1|2|G|1304
6ZU9|1|2|U|1305
6ZU9|1|2|C|1306
*
6ZU9|1|2|G|1318
6ZU9|1|2|A|1319
6ZU9|1|2|U|1320
6ZU9|1|2|A|1321
6ZU9|1|2|A|1322
Current chains
- Chain 2
- 18S ribosomal RNA
Nearby chains
- Chain I
- 40S ribosomal protein S17-A
- Chain P
- 40S ribosomal protein S0-A
- Chain R
- 40S ribosomal protein S2
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