J3_6ZVI_005
3D structure
- PDB id
- 6ZVI (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Mbf1-ribosome complex
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 3 Å
Loop
- Sequence
- CCAG*CUAGUAA*UGAUUACG
- Length
- 19 nucleotides
- Bulged bases
- None detected
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- J3_6ZVI_005 not in the Motif Atlas
- Homologous match to J3_4V88_035
- Geometric discrepancy: 0.0722
- The information below is about J3_4V88_035
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- J3_25303.1
- Basepair signature
- cWW-tSH-tHW-cSH-cSS-tHH-cSS-tWW-F-tHS-cWW-cWW
- Number of instances in this motif group
- 5
Unit IDs
6ZVI|1|h|C|1161
6ZVI|1|h|C|1162
6ZVI|1|h|A|1163
6ZVI|1|h|G|1164
*
6ZVI|1|h|C|1581
6ZVI|1|h|U|1582
6ZVI|1|h|A|1583
6ZVI|1|h|G|1584
6ZVI|1|h|U|1585
6ZVI|1|h|A|1586
6ZVI|1|h|A|1587
*
6ZVI|1|h|U|1609
6ZVI|1|h|G|1610
6ZVI|1|h|A|1611
6ZVI|1|h|U|1612
6ZVI|1|h|U|1613
6ZVI|1|h|A|1614
6ZVI|1|h|C|1615
6ZVI|1|h|G|1616
Current chains
- Chain h
- 18S rRNA
Nearby chains
- Chain N
- RPS28A isoform 1
- Chain n
- Rps5p
- Chain y
- 40S ribosomal protein S16-A
Coloring options: