J3_6ZVI_008
3D structure
- PDB id
- 6ZVI (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Mbf1-ribosome complex
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 3 Å
Loop
- Sequence
- CCAGAC*GGGUG*UUAGACG
- Length
- 18 nucleotides
- Bulged bases
- 6ZVI|1|h|A|1217, 6ZVI|1|h|G|1445, 6ZVI|1|h|C|1447
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- J3_6ZVI_008 not in the Motif Atlas
- Homologous match to J3_4V88_038
- Geometric discrepancy: 0.1284
- The information below is about J3_4V88_038
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- J3_75993.1
- Basepair signature
- cWW-tWH-F-F-tHS-cWW-cWW-cWW-F
- Number of instances in this motif group
- 2
Unit IDs
6ZVI|1|h|C|1215
6ZVI|1|h|C|1216
6ZVI|1|h|A|1217
6ZVI|1|h|G|1218
6ZVI|1|h|A|1219
6ZVI|1|h|C|1220
*
6ZVI|1|h|G|1263
6ZVI|1|h|G|1264
6ZVI|1|h|G|1265
6ZVI|1|h|U|1266
6ZVI|1|h|G|1267
*
6ZVI|1|h|U|1442
6ZVI|1|h|U|1443
6ZVI|1|h|A|1444
6ZVI|1|h|G|1445
6ZVI|1|h|A|1446
6ZVI|1|h|C|1447
6ZVI|1|h|G|1448
Current chains
- Chain h
- 18S rRNA
Nearby chains
- Chain O
- RPS29A isoform 1
- Chain Q
- RPS31 isoform 1
- Chain T
- MBF1 isoform 1
- Chain s
- 40S ribosomal protein S10-A
Coloring options: