J3_7ABZ_017

3D structure

PDB id

7ABZ (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of pre-accomodated trans-translation complex on E. coli stalled ribosome.

Experimental method

ELECTRON MICROSCOPY

Resolution

3.21 Å

Loop

Sequence

CUUG*CGGAG*CGUUAAG

Length

16 nucleotides

Bulged bases

7ABZ|1|2|U|871

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J3_7ABZ_017 not in the Motif Atlas

Homologous match to J3_5J7L_004

Geometric discrepancy: 0.1248

The information below is about J3_5J7L_004

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J3_85054.4

Basepair signature

cWW-tWW-tHS-F-cWW-tHS-cWW-F

Number of instances in this motif group

3

Unit IDs

7ABZ|1|2|C|826
7ABZ|1|2|U|827
7ABZ|1|2|U|828
7ABZ|1|2|G|829
*
7ABZ|1|2|C|857
7ABZ|1|2|G|858
7ABZ|1|2|G|859
7ABZ|1|2|A|860
7ABZ|1|2|G|861
*
7ABZ|1|2|C|868
7ABZ|1|2|G|869
7ABZ|1|2|U|870
7ABZ|1|2|U|871
7ABZ|1|2|A|872
7ABZ|1|2|A|873
7ABZ|1|2|G|874

Current chains

Chain 2

16S ribosomal RNA

Nearby chains

Chain g

30S ribosomal protein S2

Chain m

30S ribosomal protein S8

Chain z

30S ribosomal protein S21