3D structure

PDB id
7AFN (explore in PDB, NAKB, or RNA 3D Hub)
Description
Bacterial 30S ribosomal subunit assembly complex state B (head domain)
Experimental method
ELECTRON MICROSCOPY
Resolution
3.86 Å

Loop

Sequence
CAAUG*CGUAGUCC*GUCG
Length
17 nucleotides
Bulged bases
7AFN|1|1|U|1240, 7AFN|1|1|C|1302
QA status
Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.
R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
R3DMCS Rfam
J3_7AFN_008 not in the Motif Atlas
Homologous match to J3_5J7L_011
Geometric discrepancy: 0.1637
The information below is about J3_5J7L_011
Detailed Annotation
No text annotation
Broad Annotation
No text annotation
Motif group
J3_37047.6
Basepair signature
cWW-cSS-tHW-F-F-F-cWW-cWW-F-cSH-F-F
Number of instances in this motif group
4

Unit IDs

7AFN|1|1|C|1237
7AFN|1|1|A|1238
7AFN|1|1|A|1239
7AFN|1|1|U|1240
7AFN|1|1|G|1241
*
7AFN|1|1|C|1296
7AFN|1|1|G|1297
7AFN|1|1|U|1298
7AFN|1|1|A|1299
7AFN|1|1|G|1300
7AFN|1|1|U|1301
7AFN|1|1|C|1302
7AFN|1|1|C|1303
*
7AFN|1|1|G|1334
7AFN|1|1|U|1335
7AFN|1|1|C|1336
7AFN|1|1|G|1337

Current chains

Chain 1
16SrRNA (head domain of the 30S ribosome)

Nearby chains

Chain G
30S ribosomal protein S7
Chain M
30S ribosomal protein S13

Coloring options:


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