J3_7AJT_002
3D structure
- PDB id
- 7AJT (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Cryo-EM structure of the 90S-exosome super-complex (state Pre-A1-exosome)
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 4.6 Å
Loop
- Sequence
- UGA*UAAUAG*CAUUA
- Length
- 14 nucleotides
- Bulged bases
- 7AJT|1|D3|U|864
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- J3_7AJT_002 not in the Motif Atlas
- Homologous match to J3_8C3A_034
- Geometric discrepancy: 0.3174
- The information below is about J3_8C3A_034
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- J3_17385.2
- Basepair signature
- cWW-tSH-cWW-tHW-cWW-cWW-F
- Number of instances in this motif group
- 7
Unit IDs
7AJT|1|D3|U|633
7AJT|1|D3|G|634
7AJT|1|D3|A|635
*
7AJT|1|D3|U|861
7AJT|1|D3|A|862
7AJT|1|D3|A|863
7AJT|1|D3|U|864
7AJT|1|D3|A|865
7AJT|1|D3|G|866
*
7AJT|1|D3|C|962
7AJT|1|D3|A|963
7AJT|1|D3|U|964
7AJT|1|D3|U|965
7AJT|1|D3|A|966
Current chains
- Chain D3
- 18S rRNA
Nearby chains
- Chain DH
- 40S ribosomal protein S7-A
- Chain DN
- 40S ribosomal protein S13
- Chain DW
- 40S ribosomal protein S22-A
- Chain Db
- 40S ribosomal protein S27-A
- Chain JN
- Protein FAF1
- Chain JO
- KRR1 small subunit processome component
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