J3_7ASO_025
3D structure
- PDB id
- 7ASO (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Staphylococcus aureus 70S after 30 minutes incubation at 37C
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 3.11 Å
Loop
- Sequence
- CUUG*CGAUAGUGAACCAGUAC*GGAAAG
- Length
- 27 nucleotides
- Bulged bases
- 7ASO|1|Y|U|34, 7ASO|1|Y|U|494, 7ASO|1|Y|C|502
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- J3_7ASO_025 not in the Motif Atlas
- Homologous match to J3_9DFE_003
- Geometric discrepancy: 0.2575
- The information below is about J3_9DFE_003
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- J3_30040.2
- Basepair signature
- cWW-tWH-F-cWW-tSS-tHH-cSS-tWH-tSW-tHS-cWW-tWH-F-cSH-tSS-F-F
- Number of instances in this motif group
- 7
Unit IDs
7ASO|1|Y|C|32
7ASO|1|Y|U|33
7ASO|1|Y|U|34
7ASO|1|Y|G|35
*
7ASO|1|Y|C|491
7ASO|1|Y|G|492
7ASO|1|Y|A|493
7ASO|1|Y|U|494
7ASO|1|Y|A|495
7ASO|1|Y|G|496
7ASO|1|Y|U|497
7ASO|1|Y|G|498
7ASO|1|Y|A|499
7ASO|1|Y|A|500
7ASO|1|Y|C|501
7ASO|1|Y|C|502
7ASO|1|Y|A|503
7ASO|1|Y|G|504
7ASO|1|Y|U|505
7ASO|1|Y|A|506
7ASO|1|Y|C|507
*
7ASO|1|Y|G|514
7ASO|1|Y|G|515
7ASO|1|Y|A|516
7ASO|1|Y|A|517
7ASO|1|Y|A|518
7ASO|1|Y|G|519
Current chains
- Chain Y
- 23S
Nearby chains
- Chain J
- 50S ribosomal protein L4
- Chain S
- 50S ribosomal protein L20
- Chain W
- 50S ribosomal protein L23
- Chain i
- 50S ribosomal protein L34
Coloring options: