J3_7AZO_077

3D structure

PDB id

7AZO (explore in PDB, NAKB, or RNA 3D Hub)

Description

70S thermus thermophilus ribosome with bound antibiotic lead SEQ-977

Experimental method

X-RAY DIFFRACTION

Resolution

3.3 Å

Loop

Sequence

CUUGACAU*ACAG*CUUACG

Length

18 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J3_7AZO_077 not in the Motif Atlas

Homologous match to J3_4LFB_016

Geometric discrepancy: 0.1799

The information below is about J3_4LFB_016

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J3_76475.2

Basepair signature

cWW-tWH-F-tHS-cWW-cWW-F-cWS-cWS-cWW

Number of instances in this motif group

2

Unit IDs

7AZO|1|16SB|C|1613
7AZO|1|16SB|U|1614
7AZO|1|16SB|U|1615
7AZO|1|16SB|G|1616
7AZO|1|16SB|A|1617
7AZO|1|16SB|C|1618
7AZO|1|16SB|A|1619
7AZO|1|16SB|U|1620
*
7AZO|1|16SB|A|1672
7AZO|1|16SB|C|1673
7AZO|1|16SB|A|1674
7AZO|1|16SB|G|1675
*
7AZO|1|16SB|C|1837
7AZO|1|16SB|U|1838
7AZO|1|16SB|U|1839
7AZO|1|16SB|A|1840
7AZO|1|16SB|C|1841
7AZO|1|16SB|G|1842

Current chains

Chain 16SB

16S rRNA

Nearby chains

Chain S14B

30S ribosomal protein S14 type Z