J3_7BHP_008

3D structure

PDB id

7BHP (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo-EM structure of the human Ebp1 - 80S ribosome

Experimental method

ELECTRON MICROSCOPY

Resolution

3.3 Å

Loop

Sequence

GAAG*CCAUAUC*GUC

Length

14 nucleotides

Bulged bases

7BHP|1|L5|U|2788, 7BHP|1|L5|A|2789

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J3_7BHP_008 not in the Motif Atlas

Homologous match to J3_8C3A_007

Geometric discrepancy: 0.117

The information below is about J3_8C3A_007

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J3_74051.1

Basepair signature

cWW-tSH-tWW-tHW-F-F-cWW-cWW

Number of instances in this motif group

3

Unit IDs

7BHP|1|L5|G|2402
7BHP|1|L5|A|2403
7BHP|1|L5|A|2404
7BHP|1|L5|G|2405
*
7BHP|1|L5|C|2785
7BHP|1|L5|C|2786
7BHP|1|L5|A|2787
7BHP|1|L5|U|2788
7BHP|1|L5|A|2789
7BHP|1|L5|U|2790
7BHP|1|L5|C|2791
*
7BHP|1|L5|G|2800
7BHP|1|L5|U|2801
7BHP|1|L5|C|2802

Current chains

Chain L5

28S ribosomal RNA

Nearby chains

Chain Lg

60S ribosomal protein L34

Chain Lj

60S ribosomal protein L37

Chain Ll

60S ribosomal protein L39