J3_7BHP_014

3D structure

PDB id

7BHP (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo-EM structure of the human Ebp1 - 80S ribosome

Experimental method

ELECTRON MICROSCOPY

Resolution

3.3 Å

Loop

Sequence

UAUC*GUU*ACUAAUA

Length

14 nucleotides

Bulged bases

7BHP|1|L5|A|4464, 7BHP|1|L5|U|4465

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J3_7BHP_014 not in the Motif Atlas

Homologous match to J3_5TBW_014

Geometric discrepancy: 0.1203

The information below is about J3_5TBW_014

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J3_98597.1

Basepair signature

cWW-tWW-cHW-tSH-cWW-tSS-F-cSS-cWW

Number of instances in this motif group

2

Unit IDs

7BHP|1|L5|U|4463
7BHP|1|L5|A|4464
7BHP|1|L5|U|4465
7BHP|1|L5|C|4466
*
7BHP|1|L5|G|4491
7BHP|1|L5|U|4492
7BHP|1|L5|U|4493
*
7BHP|1|L5|A|4507
7BHP|1|L5|C|4508
7BHP|1|L5|U|4509
7BHP|1|L5|A|4510
7BHP|1|L5|A|4511
7BHP|1|L5|U|4512
7BHP|1|L5|A|4513

Current chains

Chain L5

28S ribosomal RNA

Nearby chains

Chain LB

60S ribosomal protein L3