J3_7CPU_007
3D structure
- PDB id
- 7CPU (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Cryo-EM structure of 80S ribosome from mouse kidney
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 2.82 Å
Loop
- Sequence
- UU*AGAAG*CGUGGA
- Length
- 13 nucleotides
- Bulged bases
- 7CPU|1|L5|A|1608, 7CPU|1|L5|U|1637
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- J3_7CPU_007 not in the Motif Atlas
- Homologous match to J3_8P9A_051
- Geometric discrepancy: 0.4091
- The information below is about J3_8P9A_051
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- J3_84137.1
- Basepair signature
- cWW-cWW-cHW-F-cSS-F-cWW
- Number of instances in this motif group
- 4
Unit IDs
7CPU|1|L5|U|1529
7CPU|1|L5|U|1530
*
7CPU|1|L5|A|1605
7CPU|1|L5|G|1606
7CPU|1|L5|A|1607
7CPU|1|L5|A|1608
7CPU|1|L5|G|1609
*
7CPU|1|L5|C|1635
7CPU|1|L5|G|1636
7CPU|1|L5|U|1637
7CPU|1|L5|G|1638
7CPU|1|L5|G|1639
7CPU|1|L5|A|1640
Current chains
- Chain L5
- Mus musculus 28S ribosomal RNA
Nearby chains
- Chain LF
- 60S ribosomal protein L7
- Chain LT
- 60S ribosomal protein L21
- Chain Lb
- 60S ribosomal protein L29
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