J3_7CPU_009

3D structure

PDB id

7CPU (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo-EM structure of 80S ribosome from mouse kidney

Experimental method

ELECTRON MICROSCOPY

Resolution

2.82 Å

Loop

Sequence

GAAG*CCAUAUC*GUC

Length

14 nucleotides

Bulged bases

7CPU|1|L5|U|2542, 7CPU|1|L5|A|2543

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J3_7CPU_009 not in the Motif Atlas

Homologous match to J3_8C3A_007

Geometric discrepancy: 0.0796

The information below is about J3_8C3A_007

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J3_74051.1

Basepair signature

cWW-tSH-tWW-tHW-F-F-cWW-cWW

Number of instances in this motif group

3

Unit IDs

7CPU|1|L5|G|2159
7CPU|1|L5|A|2160
7CPU|1|L5|A|2161
7CPU|1|L5|G|2162
*
7CPU|1|L5|C|2539
7CPU|1|L5|C|2540
7CPU|1|L5|A|2541
7CPU|1|L5|U|2542
7CPU|1|L5|A|2543
7CPU|1|L5|U|2544
7CPU|1|L5|C|2545
*
7CPU|1|L5|G|2554
7CPU|1|L5|U|2555
7CPU|1|L5|C|2556

Current chains

Chain L5

Mus musculus 28S ribosomal RNA

Nearby chains

Chain Lg

60S ribosomal protein L34

Chain Lj

60S ribosomal protein L37

Chain Ll

60S ribosomal protein L39