J3_7CPU_012

3D structure

PDB id

7CPU (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo-EM structure of 80S ribosome from mouse kidney

Experimental method

ELECTRON MICROSCOPY

Resolution

2.82 Å

Loop

Sequence

UG*CGACC*GA

Length

9 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J3_7CPU_012 not in the Motif Atlas

Homologous match to J3_8C3A_054

Geometric discrepancy: 0.2574

The information below is about J3_8C3A_054

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J3_16991.1

Basepair signature

cWW-F-cWW-F-F-cWW

Number of instances in this motif group

3

Unit IDs

7CPU|1|L5|U|2329
7CPU|1|L5|G|2330
*
7CPU|1|L5|C|2339
7CPU|1|L5|G|2340
7CPU|1|L5|A|2341
7CPU|1|L5|C|2342
7CPU|1|L5|C|2343
*
7CPU|1|L5|G|2510
7CPU|1|L5|A|2511

Current chains

Chain L5

Mus musculus 28S ribosomal RNA

Nearby chains

Chain LZ

60S ribosomal protein L27

Chain Lg

60S ribosomal protein L34