J3_7CPU_015
3D structure
- PDB id
- 7CPU (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Cryo-EM structure of 80S ribosome from mouse kidney
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 2.82 Å
Loop
- Sequence
- CUC*GAG*CAAAAG
- Length
- 12 nucleotides
- Bulged bases
- 7CPU|1|L5|A|3933
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- J3_7CPU_015 not in the Motif Atlas
- Homologous match to J3_5TBW_013
- Geometric discrepancy: 0.093
- The information below is about J3_5TBW_013
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- J3_91491.5
- Basepair signature
- cWW-F-tWW-tHW-cWW-F-cWW
- Number of instances in this motif group
- 7
Unit IDs
7CPU|1|L5|C|3894
7CPU|1|L5|U|3895
7CPU|1|L5|C|3896
*
7CPU|1|L5|G|3920
7CPU|1|L5|A|3921
7CPU|1|L5|G|3922
*
7CPU|1|L5|C|3931
7CPU|1|L5|A|3932
7CPU|1|L5|A|3933
7CPU|1|L5|A|3934
7CPU|1|L5|A|3935
7CPU|1|L5|G|3936
Current chains
- Chain L5
- Mus musculus 28S ribosomal RNA
Nearby chains
- Chain L7
- 5S ribosomal RNA; 5S rRNA
- Chain LD
- 60S ribosomal protein L5
- Chain LJ
- 60S ribosomal protein L11
- Chain LT
- 60S ribosomal protein L21
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