J3_7CPU_026
3D structure
- PDB id
- 7CPU (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Cryo-EM structure of 80S ribosome from mouse kidney
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 2.82 Å
Loop
- Sequence
- UGGA*UAC*GGAA
- Length
- 11 nucleotides
- Bulged bases
- None detected
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- J3_7CPU_026 not in the Motif Atlas
- Homologous match to J3_8C3A_039
- Geometric discrepancy: 0.0912
- The information below is about J3_8C3A_039
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- J3_52655.3
- Basepair signature
- cWW-tSH-cWW-F-cWW-cWW
- Number of instances in this motif group
- 4
Unit IDs
7CPU|1|S2|U|1226
7CPU|1|S2|G|1227
7CPU|1|S2|G|1228
7CPU|1|S2|A|1229
*
7CPU|1|S2|U|1531
7CPU|1|S2|A|1532
7CPU|1|S2|C|1533
*
7CPU|1|S2|G|1639
7CPU|1|S2|G|1640
7CPU|1|S2|A|1641
7CPU|1|S2|A|1642
Current chains
- Chain S2
- Mus musculus 18S ribosomal RNA
Nearby chains
- Chain S6
- Transfer RNA; tRNA
- Chain SF
- 40S ribosomal protein S5
- Chain SQ
- 40S ribosomal protein S16
- Chain SS
- 40S ribosomal protein S18
- Chain ST
- 40S ribosomal protein S19
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