J3_7CPU_041
3D structure
- PDB id
- 7CPU (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Cryo-EM structure of 80S ribosome from mouse kidney
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 2.82 Å
Loop
- Sequence
- AGAUUAAG*CGCGCAAAU*AGU
- Length
- 20 nucleotides
- Bulged bases
- 7CPU|1|S2|A|46
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- J3_7CPU_041 not in the Motif Atlas
- Homologous match to J3_8C3A_083
- Geometric discrepancy: 0.074
- The information below is about J3_8C3A_083
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- J3_46317.2
- Basepair signature
- cWW-F-tWH-cSW-cWW-cWW-F-F-cSW-cWW
- Number of instances in this motif group
- 5
Unit IDs
7CPU|1|S2|A|40
7CPU|1|S2|G|41
7CPU|1|S2|A|42
7CPU|1|S2|U|43
7CPU|1|S2|U|44
7CPU|1|S2|A|45
7CPU|1|S2|A|46
7CPU|1|S2|G|47
*
7CPU|1|S2|C|480
7CPU|1|S2|G|481
7CPU|1|S2|C|482
7CPU|1|S2|G|483
7CPU|1|S2|C|484
7CPU|1|S2|A|485
7CPU|1|S2|A|486
7CPU|1|S2|A|487
7CPU|1|S2|U|488
*
7CPU|1|S2|A|513
7CPU|1|S2|G|514
7CPU|1|S2|U|515
Current chains
- Chain S2
- Mus musculus 18S ribosomal RNA
Nearby chains
- Chain SJ
- 40S ribosomal protein S9
- Chain SX
- 40S ribosomal protein S23
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