J3_7CPU_043
3D structure
- PDB id
- 7CPU (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Cryo-EM structure of 80S ribosome from mouse kidney
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 2.82 Å
Loop
- Sequence
- CGGAC*GGGUG*UUAGAUG
- Length
- 17 nucleotides
- Bulged bases
- 7CPU|1|S2|G|1275, 7CPU|1|S2|G|1508, 7CPU|1|S2|U|1510
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- J3_7CPU_043 not in the Motif Atlas
- Homologous match to J3_8C3A_041
- Geometric discrepancy: 0.5907
- The information below is about J3_8C3A_041
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- J3_23728.1
- Basepair signature
- cWW-tWH-F-F-tHS-cWW-cWW-cWW-F
- Number of instances in this motif group
- 2
Unit IDs
7CPU|1|S2|C|1274
7CPU|1|S2|G|1275
7CPU|1|S2|G|1276
7CPU|1|S2|A|1277
7CPU|1|S2|C|1278
*
7CPU|1|S2|G|1321
7CPU|1|S2|G|1322
7CPU|1|S2|G|1323
7CPU|1|S2|U|1324
7CPU|1|S2|G|1325
*
7CPU|1|S2|U|1505
7CPU|1|S2|U|1506
7CPU|1|S2|A|1507
7CPU|1|S2|G|1508
7CPU|1|S2|A|1509
7CPU|1|S2|U|1510
7CPU|1|S2|G|1511
Current chains
- Chain S2
- Mus musculus 18S ribosomal RNA
Nearby chains
- Chain SK
- 40S ribosomal protein S10
- Chain Sd
- 40S ribosomal protein S29
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