J3_7D80_006

3D structure

PDB id

7D80 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Molecular model of the cryo-EM structure of 70S ribosome in complex with peptide deformylase, trigger factor, and methionine aminopeptidase

Experimental method

ELECTRON MICROSCOPY

Resolution

4.1 Å

Loop

Sequence

CAAG*CCCAAAC*GUG

Length

14 nucleotides

Bulged bases

7D80|1|A|A|1609

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J3_7D80_006 not in the Motif Atlas

Homologous match to J3_7A0S_007

Geometric discrepancy: 0.1967

The information below is about J3_7A0S_007

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J3_71677.1

Basepair signature

cWW-tSH-tWW-tHH-F-tHW-cWW-F-cWW

Number of instances in this motif group

2

Unit IDs

7D80|1|A|C|1306
7D80|1|A|A|1307
7D80|1|A|A|1308
7D80|1|A|G|1309
*
7D80|1|A|C|1605
7D80|1|A|C|1606
7D80|1|A|C|1607
7D80|1|A|A|1608
7D80|1|A|A|1609
7D80|1|A|A|1610
7D80|1|A|C|1611
*
7D80|1|A|G|1620
7D80|1|A|U|1621
7D80|1|A|G|1622

Current chains

Chain A

23S ribosomal RNA

Nearby chains

Chain 0

50S ribosomal protein L34