3D structure

PDB id
7D80 (explore in PDB, NAKB, or RNA 3D Hub)
Description
Molecular model of the cryo-EM structure of 70S ribosome in complex with peptide deformylase, trigger factor, and methionine aminopeptidase
Experimental method
ELECTRON MICROSCOPY
Resolution
4.1 Å

Loop

Sequence
CUUG*CGGAG*CGUUAAG
Length
16 nucleotides
Bulged bases
7D80|1|B|U|871, 7D80|1|B|A|873
QA status
Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.
R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
R3DMCS Rfam
J3_7D80_015 not in the Motif Atlas
Homologous match to J3_5J7L_004
Geometric discrepancy: 0.1113
The information below is about J3_5J7L_004
Detailed Annotation
No text annotation
Broad Annotation
No text annotation
Motif group
J3_85054.4
Basepair signature
cWW-tWW-tHS-F-cWW-tHS-cWW-F
Number of instances in this motif group
3

Unit IDs

7D80|1|B|C|826
7D80|1|B|U|827
7D80|1|B|U|828
7D80|1|B|G|829
*
7D80|1|B|C|857
7D80|1|B|G|858
7D80|1|B|G|859
7D80|1|B|A|860
7D80|1|B|G|861
*
7D80|1|B|C|868
7D80|1|B|G|869
7D80|1|B|U|870
7D80|1|B|U|871
7D80|1|B|A|872
7D80|1|B|A|873
7D80|1|B|G|874

Current chains

Chain B
16S ribosomal RNA

Nearby chains

Chain C
30S ribosomal protein S2
Chain I
30S ribosomal protein S8
Chain V
30S ribosomal protein S21

Coloring options:


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