J3_7F0D_012

3D structure

PDB id

7F0D (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo-EM structure of Mycobacterium tuberculosis 50S ribosome subunit bound with clarithromycin

Experimental method

ELECTRON MICROSCOPY

Resolution

3.3 Å

Loop

Sequence

CAUC*GUUG*CAUUAAAG

Length

16 nucleotides

Bulged bases

7F0D|1|A|A|2756, 7F0D|1|A|U|2757

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J3_7F0D_012 not in the Motif Atlas

Geometric match to J3_4V9F_009

Geometric discrepancy: 0.19

The information below is about J3_4V9F_009

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J3_68010.1

Basepair signature

cWW-cWH-cWW-cSS-tWH-tSS-F-cWW-F-cWW

Number of instances in this motif group

2

Unit IDs

7F0D|1|A|C|2755
7F0D|1|A|A|2756
7F0D|1|A|U|2757
7F0D|1|A|C|2758
*
7F0D|1|A|G|2783
7F0D|1|A|U|2784
7F0D|1|A|U|2785
7F0D|1|A|G|2786
*
7F0D|1|A|C|2798
7F0D|1|A|A|2799
7F0D|1|A|U|2800
7F0D|1|A|U|2801
7F0D|1|A|A|2802
7F0D|1|A|A|2803
7F0D|1|A|A|2804
7F0D|1|A|G|2805

Current chains

Chain A

23S rRNA

Nearby chains

Chain D

50S ribosomal protein L3

Chain K

50S ribosomal protein L14