J3_7F0D_016
3D structure
- PDB id
- 7F0D (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Cryo-EM structure of Mycobacterium tuberculosis 50S ribosome subunit bound with clarithromycin
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 3.3 Å
Loop
- Sequence
- CUUG*CGAUAGCGGAUUAGUAC*GGAAUG
- Length
- 27 nucleotides
- Bulged bases
- 7F0D|1|A|U|537, 7F0D|1|A|U|545
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- J3_7F0D_016 not in the Motif Atlas
- Homologous match to J3_9DFE_003
- Geometric discrepancy: 0.1537
- The information below is about J3_9DFE_003
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- J3_07616.1
- Basepair signature
- cWW-cSS-tSS-tSW-tHW-cWW-tWH-F-F-tHH-tSS-tWH-F-tHS-cWW-F-cSH
- Number of instances in this motif group
- 10
Unit IDs
7F0D|1|A|C|32
7F0D|1|A|U|33
7F0D|1|A|U|34
7F0D|1|A|G|35
*
7F0D|1|A|C|534
7F0D|1|A|G|535
7F0D|1|A|A|536
7F0D|1|A|U|537
7F0D|1|A|A|538
7F0D|1|A|G|539
7F0D|1|A|C|540
7F0D|1|A|G|541
7F0D|1|A|G|542
7F0D|1|A|A|543
7F0D|1|A|U|544
7F0D|1|A|U|545
7F0D|1|A|A|546
7F0D|1|A|G|547
7F0D|1|A|U|548
7F0D|1|A|A|549
7F0D|1|A|C|550
*
7F0D|1|A|G|557
7F0D|1|A|G|558
7F0D|1|A|A|559
7F0D|1|A|A|560
7F0D|1|A|U|561
7F0D|1|A|G|562
Current chains
- Chain A
- 23S rRNA
Nearby chains
- Chain 2
- 50S ribosomal protein L34
- Chain E
- 50S ribosomal protein L4
- Chain Q
- 50S ribosomal protein L20
- Chain T
- 50S ribosomal protein L23
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