J3_7JQB_003
3D structure
- PDB id
- 7JQB (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- SARS-CoV-2 Nsp1 and rabbit 40S ribosome complex
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 2.7 Å
Loop
- Sequence
- AGAG*CAG*CUGGAU
- Length
- 13 nucleotides
- Bulged bases
- None detected
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- J3_7JQB_003 not in the Motif Atlas
- Homologous match to J3_4V88_032
- Geometric discrepancy: 0.1978
- The information below is about J3_4V88_032
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- J3_54972.1
- Basepair signature
- cWW-tWW-F-cWW-F-tHS-F-cWW
- Number of instances in this motif group
- 2
Unit IDs
7JQB|1|A|A|816
7JQB|1|A|G|817
7JQB|1|A|A|818
7JQB|1|A|G|819
*
7JQB|1|A|C|829
7JQB|1|A|A|830
7JQB|1|A|G|831
*
7JQB|1|A|C|843
7JQB|1|A|U|844
7JQB|1|A|G|845
7JQB|1|A|G|846
7JQB|1|A|A|847
7JQB|1|A|U|848
Current chains
- Chain A
- rRNA
Nearby chains
- Chain K
- uS4
- Chain M
- 40S ribosomal protein S4
- Chain Z
- 40S ribosomal protein S24
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