J3_7JQB_006
3D structure
- PDB id
- 7JQB (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- SARS-CoV-2 Nsp1 and rabbit 40S ribosome complex
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 2.7 Å
Loop
- Sequence
- CCAG*CCAGUAA*UGAUUAAG
- Length
- 19 nucleotides
- Bulged bases
- None detected
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- J3_7JQB_006 not in the Motif Atlas
- Homologous match to J3_4V88_035
- Geometric discrepancy: 0.1268
- The information below is about J3_4V88_035
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- J3_25303.1
- Basepair signature
- cWW-tSH-tHW-cSH-cSS-tHH-cSS-tWW-F-tHS-cWW-cWW
- Number of instances in this motif group
- 5
Unit IDs
7JQB|1|A|C|1218
7JQB|1|A|C|1219
7JQB|1|A|A|1220
7JQB|1|A|G|1221
*
7JQB|1|A|C|1645
7JQB|1|A|C|1646
7JQB|1|A|A|1647
7JQB|1|A|G|1648
7JQB|1|A|U|1649
7JQB|1|A|A|1650
7JQB|1|A|A|1651
*
7JQB|1|A|U|1673
7JQB|1|A|G|1674
7JQB|1|A|A|1675
7JQB|1|A|U|1676
7JQB|1|A|U|1677
7JQB|1|A|A|1678
7JQB|1|A|A|1679
7JQB|1|A|G|1680
Current chains
- Chain A
- rRNA
Nearby chains
- Chain G
- uS7
- Chain R
- Uncharacterized protein
- Chain d
- eS28
Coloring options: