J3_7LS2_004

3D structure

PDB id

7LS2 (explore in PDB, NAKB, or RNA 3D Hub)

Description

80S ribosome from mouse bound to eEF2 (Class I)

Experimental method

ELECTRON MICROSCOPY

Resolution

3.1 Å

Loop

Sequence

UGA(A2M)CUA*UAG*CGAA

Length

14 nucleotides

Bulged bases

7LS2|1|A2|G|1454, 7LS2|1|A2|A|1455

QA status

Modified nucleotides: A2M

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J3_7LS2_004 not in the Motif Atlas

Homologous match to J3_5TBW_004

Geometric discrepancy: 0.1437

The information below is about J3_5TBW_004

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J3_39238.5

Basepair signature

cWW-tWH-cWW-tSW-F-F-cWW

Number of instances in this motif group

7

Unit IDs

7LS2|1|A2|U|1344
7LS2|1|A2|G|1345
7LS2|1|A2|A|1346
7LS2|1|A2|A2M|1347
7LS2|1|A2|C|1348
7LS2|1|A2|U|1349
7LS2|1|A2|A|1350
*
7LS2|1|A2|U|1435
7LS2|1|A2|A|1436
7LS2|1|A2|G|1437
*
7LS2|1|A2|C|1453
7LS2|1|A2|G|1454
7LS2|1|A2|A|1455
7LS2|1|A2|A|1456

Current chains

Chain A2

28S rRNA

Nearby chains

Chain D2

60S ribosomal protein L8

Chain H1

60S ribosomal protein L15

Chain d2

60S ribosomal protein L37