J3_7LS2_014
3D structure
- PDB id
- 7LS2 (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- 80S ribosome from mouse bound to eEF2 (Class I)
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 3.1 Å
Loop
- Sequence
- CUC*GAG*CAAAAG
- Length
- 12 nucleotides
- Bulged bases
- 7LS2|1|A2|A|3932
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- J3_7LS2_014 not in the Motif Atlas
- Homologous match to J3_5TBW_013
- Geometric discrepancy: 0.1926
- The information below is about J3_5TBW_013
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- J3_91491.5
- Basepair signature
- cWW-F-tWW-tHW-cWW-F-cWW
- Number of instances in this motif group
- 7
Unit IDs
7LS2|1|A2|C|3893
7LS2|1|A2|U|3894
7LS2|1|A2|C|3895
*
7LS2|1|A2|G|3919
7LS2|1|A2|A|3920
7LS2|1|A2|G|3921
*
7LS2|1|A2|C|3930
7LS2|1|A2|A|3931
7LS2|1|A2|A|3932
7LS2|1|A2|A|3933
7LS2|1|A2|A|3934
7LS2|1|A2|G|3935
Current chains
- Chain A2
- 28S rRNA
Nearby chains
- Chain B2
- 5S ribosomal RNA; 5S rRNA
- Chain E1
- 60S ribosomal protein L11
- Chain G2
- 60S ribosomal protein L5
- Chain N2
- 60S ribosomal protein L21
- Chain i2
- 60S ribosomal protein L36a
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