J3_7LS2_024

3D structure

PDB id

7LS2 (explore in PDB, NAKB, or RNA 3D Hub)

Description

80S ribosome from mouse bound to eEF2 (Class I)

Experimental method

ELECTRON MICROSCOPY

Resolution

3.1 Å

Loop

Sequence

CCAG*CCAGUAA*UGAUUAAG

Length

19 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J3_7LS2_024 not in the Motif Atlas

Homologous match to J3_4V88_035

Geometric discrepancy: 0.1831

The information below is about J3_4V88_035

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J3_25303.1

Basepair signature

cWW-tSH-tHW-cSH-cSS-tHH-cSS-tWW-F-tHS-cWW-cWW

Number of instances in this motif group

5

Unit IDs

7LS2|1|m2|C|1220
7LS2|1|m2|C|1221
7LS2|1|m2|A|1222
7LS2|1|m2|G|1223
*
7LS2|1|m2|C|1647
7LS2|1|m2|C|1648
7LS2|1|m2|A|1649
7LS2|1|m2|G|1650
7LS2|1|m2|U|1651
7LS2|1|m2|A|1652
7LS2|1|m2|A|1653
*
7LS2|1|m2|U|1675
7LS2|1|m2|G|1676
7LS2|1|m2|A|1677
7LS2|1|m2|U|1678
7LS2|1|m2|U|1679
7LS2|1|m2|A|1680
7LS2|1|m2|A|1681
7LS2|1|m2|G|1682

Current chains

Chain m2

18S rRNA

Nearby chains

Chain G3

40S ribosomal protein S28

Chain s2

40S ribosomal protein S5

Chain y2

40S ribosomal protein S16