J3_7M4Z_005

3D structure

PDB id

7M4Z (explore in PDB, NAKB, or RNA 3D Hub)

Description

A. baumannii Ribosome-Eravacycline complex: 70S with hpf

Experimental method

ELECTRON MICROSCOPY

Resolution

2.92 Å

Loop

Sequence

CGAAAG*CAG*CAAG

Length

13 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J3_7M4Z_005 not in the Motif Atlas

Homologous match to J3_5J7L_041

Geometric discrepancy: 0.2017

The information below is about J3_5J7L_041

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J3_32852.6

Basepair signature

cWW-tSH-F-F-F-cWW-cWW-F

Number of instances in this motif group

5

Unit IDs

7M4Z|1|A|C|1293
7M4Z|1|A|G|1294
7M4Z|1|A|A|1295
7M4Z|1|A|A|1296
7M4Z|1|A|A|1297
7M4Z|1|A|G|1298
*
7M4Z|1|A|C|1623
7M4Z|1|A|A|1624
7M4Z|1|A|G|1625
*
7M4Z|1|A|C|1637
7M4Z|1|A|A|1638
7M4Z|1|A|A|1639
7M4Z|1|A|G|1640

Current chains

Chain A

23s ribosomal RNA

Nearby chains