3D structure

PDB id
7M4Z (explore in PDB, NAKB, or RNA 3D Hub)
Description
A. baumannii Ribosome-Eravacycline complex: 70S with hpf
Experimental method
ELECTRON MICROSCOPY
Resolution
2.92 Å

Loop

Sequence
GCUUAAC*GGGGAAUAU*AGC
Length
19 nucleotides
Bulged bases
7M4Z|1|a|U|50, 7M4Z|1|a|A|52, 7M4Z|1|a|A|53
QA status
Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.
R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
R3DMCS Rfam
J3_7M4Z_033 not in the Motif Atlas
Homologous match to J3_5J7L_050
Geometric discrepancy: 0.0814
The information below is about J3_5J7L_050
Detailed Annotation
No text annotation
Broad Annotation
No text annotation
Motif group
J3_46317.4
Basepair signature
cWW-cWW-cSW-F-cWW-F-F-F-F-cWW-F-F-F-F
Number of instances in this motif group
4

Unit IDs

7M4Z|1|a|G|48
7M4Z|1|a|C|49
7M4Z|1|a|U|50
7M4Z|1|a|U|51
7M4Z|1|a|A|52
7M4Z|1|a|A|53
7M4Z|1|a|C|54
*
7M4Z|1|a|G|355
7M4Z|1|a|G|356
7M4Z|1|a|G|357
7M4Z|1|a|G|358
7M4Z|1|a|A|359
7M4Z|1|a|A|360
7M4Z|1|a|U|361
7M4Z|1|a|A|362
7M4Z|1|a|U|363
*
7M4Z|1|a|A|389
7M4Z|1|a|G|390
7M4Z|1|a|C|391

Current chains

Chain a
16s Ribosomal RNA

Nearby chains

Chain l
30S ribosomal protein S12
Chain p
30S ribosomal protein S16

Coloring options:


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