J3_7M4Z_036

3D structure

PDB id

7M4Z (explore in PDB, NAKB, or RNA 3D Hub)

Description

A. baumannii Ribosome-Eravacycline complex: 70S with hpf

Experimental method

ELECTRON MICROSCOPY

Resolution

2.92 Å

Loop

Sequence

CUUGACAU*ACAG*CUUACG

Length

18 nucleotides

Bulged bases

7M4Z|1|a|C|1211

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J3_7M4Z_036 not in the Motif Atlas

Homologous match to J3_4LFB_016

Geometric discrepancy: 0.1281

The information below is about J3_4LFB_016

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J3_76475.2

Basepair signature

cWW-tWH-F-tHS-cWW-cWW-F-cWS-cWS-cWW

Number of instances in this motif group

2

Unit IDs

7M4Z|1|a|C|987
7M4Z|1|a|U|988
7M4Z|1|a|U|989
7M4Z|1|a|G|990
7M4Z|1|a|A|991
7M4Z|1|a|C|992
7M4Z|1|a|A|993
7M4Z|1|a|U|994
*
7M4Z|1|a|A|1041
7M4Z|1|a|C|1042
7M4Z|1|a|A|1043
7M4Z|1|a|G|1044
*
7M4Z|1|a|C|1207
7M4Z|1|a|U|1208
7M4Z|1|a|U|1209
7M4Z|1|a|A|1210
7M4Z|1|a|C|1211
7M4Z|1|a|G|1212

Current chains

Chain a

16s Ribosomal RNA

Nearby chains

Chain n

30S ribosomal protein S14