3D structure

PDB id
7MPI (explore in PDB, NAKB, or RNA 3D Hub)
Description
Stm1 bound vacant 80S structure isolated from cbf5-D95A
Experimental method
ELECTRON MICROSCOPY
Resolution
3.05 Å

Loop

Sequence
GAAA*UGAUAAC*GUC
Length
14 nucleotides
Bulged bases
7MPI|1|A1|U|1840, 7MPI|1|A1|A|1841
QA status
Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.
R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
R3DMCS Rfam
J3_7MPI_008 not in the Motif Atlas
Homologous match to J3_8C3A_007
Geometric discrepancy: 0.0795
The information below is about J3_8C3A_007
Detailed Annotation
No text annotation
Broad Annotation
No text annotation
Motif group
J3_74051.1
Basepair signature
cWW-tSH-tWW-tHW-F-F-cWW-cWW
Number of instances in this motif group
3

Unit IDs

7MPI|1|A1|G|1488
7MPI|1|A1|A|1489
7MPI|1|A1|A|1490
7MPI|1|A1|A|1491
*
7MPI|1|A1|U|1837
7MPI|1|A1|G|1838
7MPI|1|A1|A|1839
7MPI|1|A1|U|1840
7MPI|1|A1|A|1841
7MPI|1|A1|A|1842
7MPI|1|A1|C|1843
*
7MPI|1|A1|G|1852
7MPI|1|A1|U|1853
7MPI|1|A1|C|1854

Current chains

Chain A1
25S rRNA

Nearby chains

Chain A4
5.8S ribosomal RNA; 5.8S rRNA
Chain Ag
60S ribosomal protein L34-A
Chain Aj
60S ribosomal protein L37-A
Chain Al
60S ribosomal protein L39

Coloring options:


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