J3_7MPI_025

3D structure

PDB id

7MPI (explore in PDB, NAKB, or RNA 3D Hub)

Description

Stm1 bound vacant 80S structure isolated from cbf5-D95A

Experimental method

ELECTRON MICROSCOPY

Resolution

3.05 Å

Loop

Sequence

CCAGAC*GGGUG*UUAGACG

Length

18 nucleotides

Bulged bases

7MPI|1|B5|A|1217, 7MPI|1|B5|G|1445, 7MPI|1|B5|C|1447

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J3_7MPI_025 not in the Motif Atlas

Homologous match to J3_8C3A_041

Geometric discrepancy: 0.157

The information below is about J3_8C3A_041

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J3_23728.1

Basepair signature

cWW-tWH-F-F-tHS-cWW-cWW-cWW-F

Number of instances in this motif group

2

Unit IDs

7MPI|1|B5|C|1215
7MPI|1|B5|C|1216
7MPI|1|B5|A|1217
7MPI|1|B5|G|1218
7MPI|1|B5|A|1219
7MPI|1|B5|C|1220
*
7MPI|1|B5|G|1263
7MPI|1|B5|G|1264
7MPI|1|B5|G|1265
7MPI|1|B5|U|1266
7MPI|1|B5|G|1267
*
7MPI|1|B5|U|1442
7MPI|1|B5|U|1443
7MPI|1|B5|A|1444
7MPI|1|B5|G|1445
7MPI|1|B5|A|1446
7MPI|1|B5|C|1447
7MPI|1|B5|G|1448

Current chains

Chain B5

18S rRNA

Nearby chains

Chain BK

40S ribosomal protein S10-A

Chain Bd

40S ribosomal protein S29-A

Chain Bf

40S ribosomal protein S31