J3_7MSM_008

3D structure

PDB id

7MSM (explore in PDB, NAKB, or RNA 3D Hub)

Description

Mtb 70SIC in complex with MtbEttA at Trans_R0 state

Experimental method

ELECTRON MICROSCOPY

Resolution

2.79 Å

Loop

Sequence

CAAG*CCCAAAC*GUG

Length

14 nucleotides

Bulged bases

7MSM|1|A|A|1844

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J3_7MSM_008 not in the Motif Atlas

Homologous match to J3_7A0S_007

Geometric discrepancy: 0.1351

The information below is about J3_7A0S_007

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J3_71677.1

Basepair signature

cWW-tSH-tWW-tHH-F-tHW-cWW-F-cWW

Number of instances in this motif group

2

Unit IDs

7MSM|1|A|C|1437
7MSM|1|A|A|1438
7MSM|1|A|A|1439
7MSM|1|A|G|1440
*
7MSM|1|A|C|1840
7MSM|1|A|C|1841
7MSM|1|A|C|1842
7MSM|1|A|A|1843
7MSM|1|A|A|1844
7MSM|1|A|A|1845
7MSM|1|A|C|1846
*
7MSM|1|A|G|1855
7MSM|1|A|U|1856
7MSM|1|A|G|1857

Current chains

Chain A

23S rRNA

Nearby chains

Chain 2

50S ribosomal protein L34