J3_7MSM_020

3D structure

PDB id

7MSM (explore in PDB, NAKB, or RNA 3D Hub)

Description

Mtb 70SIC in complex with MtbEttA at Trans_R0 state

Experimental method

ELECTRON MICROSCOPY

Resolution

2.79 Å

Loop

Sequence

CUAG*CGUAG*CAUUAAG

Length

16 nucleotides

Bulged bases

7MSM|1|a|U|864

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J3_7MSM_020 not in the Motif Atlas

Homologous match to J3_5J7L_004

Geometric discrepancy: 0.1254

The information below is about J3_5J7L_004

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J3_85054.4

Basepair signature

cWW-tWW-tHS-F-cWW-tHS-cWW-F

Number of instances in this motif group

3

Unit IDs

7MSM|1|a|C|817
7MSM|1|a|U|818
7MSM|1|a|A|819
7MSM|1|a|G|820
*
7MSM|1|a|C|850
7MSM|1|a|G|851
7MSM|1|a|U|852
7MSM|1|a|A|853
7MSM|1|a|G|854
*
7MSM|1|a|C|861
7MSM|1|a|A|862
7MSM|1|a|U|863
7MSM|1|a|U|864
7MSM|1|a|A|865
7MSM|1|a|A|866
7MSM|1|a|G|867

Current chains

Chain a

16S rRNA

Nearby chains

Chain h

30S ribosomal protein S8