J3_7N2C_017

3D structure

PDB id

7N2C (explore in PDB, NAKB, or RNA 3D Hub)

Description

Elongating 70S ribosome complex in a fusidic acid-stalled intermediate state of translocation bound to EF-G(GDP) (INT2)

Experimental method

ELECTRON MICROSCOPY

Resolution

2.72 Å

Loop

Sequence

GGA*UUUAAAG*CAC

Length

13 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J3_7N2C_017 not in the Motif Atlas

Homologous match to J3_6PRV_001

Geometric discrepancy: 0.1279

The information below is about J3_6PRV_001

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J3_37832.1

Basepair signature

cWW-tSS-cSS-tSH-cWW-cWW-tWW-F-F

Number of instances in this motif group

5

Unit IDs

7N2C|1|23|G|1055
7N2C|1|23|G|1056
7N2C|1|23|A|1057
*
7N2C|1|23|U|1081
7N2C|1|23|U|1082
7N2C|1|23|U|1083
7N2C|1|23|A|1084
7N2C|1|23|A|1085
7N2C|1|23|A|1086
7N2C|1|23|G|1087
*
7N2C|1|23|C|1102
7N2C|1|23|A|1103
7N2C|1|23|C|1104

Current chains

Chain 23

23S rRNA

Nearby chains

Chain LJ

50S ribosomal protein L10

Chain LK

50S ribosomal protein L11

Chain Lj

50S ribosomal protein L36