J3_7N2C_036

3D structure

PDB id

7N2C (explore in PDB, NAKB, or RNA 3D Hub)

Description

Elongating 70S ribosome complex in a fusidic acid-stalled intermediate state of translocation bound to EF-G(GDP) (INT2)

Experimental method

ELECTRON MICROSCOPY

Resolution

2.72 Å

Loop

Sequence

GGGACG*CC*GAAAAGC

Length

15 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J3_7N2C_036 not in the Motif Atlas

Homologous match to J3_5J7L_069

Geometric discrepancy: 0.069

The information below is about J3_5J7L_069

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J3_34864.2

Basepair signature

cWW-F-cWW-F-tHH-F-tHS-tHS-cWW

Number of instances in this motif group

4

Unit IDs

7N2C|1|23|G|1424
7N2C|1|23|G|1425
7N2C|1|23|G|1426
7N2C|1|23|A|1427
7N2C|1|23|C|1428
7N2C|1|23|G|1429
*
7N2C|1|23|C|1564
7N2C|1|23|C|1565
*
7N2C|1|23|G|1568
7N2C|1|23|A|1569
7N2C|1|23|A|1570
7N2C|1|23|A|1571
7N2C|1|23|A|1572
7N2C|1|23|G|1573
7N2C|1|23|C|1574

Current chains

Chain 23

23S rRNA

Nearby chains

Chain LB

50S ribosomal protein L2