J3_7NRD_009
3D structure
- PDB id
- 7NRD (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Structure of the yeast Gcn1 bound to a colliding stalled 80S ribosome with MBF1, A/P-tRNA and P/E-tRNA
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 4.36 Å
Loop
- Sequence
- GAAA*UGAUAAC*GUC
- Length
- 14 nucleotides
- Bulged bases
- 7NRD|1|LA|U|1840, 7NRD|1|LA|A|1841
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- J3_7NRD_009 not in the Motif Atlas
- Homologous match to J3_8C3A_007
- Geometric discrepancy: 0.1436
- The information below is about J3_8C3A_007
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- J3_74051.1
- Basepair signature
- cWW-tSH-tWW-tHW-F-F-cWW-cWW
- Number of instances in this motif group
- 3
Unit IDs
7NRD|1|LA|G|1488
7NRD|1|LA|A|1489
7NRD|1|LA|A|1490
7NRD|1|LA|A|1491
*
7NRD|1|LA|U|1837
7NRD|1|LA|G|1838
7NRD|1|LA|A|1839
7NRD|1|LA|U|1840
7NRD|1|LA|A|1841
7NRD|1|LA|A|1842
7NRD|1|LA|C|1843
*
7NRD|1|LA|G|1852
7NRD|1|LA|U|1853
7NRD|1|LA|C|1854
Current chains
- Chain LA
- 25S rRNA (3184-MER)
Nearby chains
- Chain LC
- 5.8S ribosomal RNA; 5.8S rRNA
- Chain Li
- 60S ribosomal protein L34-A
- Chain Ll
- 60S ribosomal protein L37-A
- Chain Ln
- 60S ribosomal protein L39
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