J3_7NRD_011

3D structure

PDB id

7NRD (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of the yeast Gcn1 bound to a colliding stalled 80S ribosome with MBF1, A/P-tRNA and P/E-tRNA

Experimental method

ELECTRON MICROSCOPY

Resolution

4.36 Å

Loop

Sequence

CA*UAACU*AG

Length

9 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J3_7NRD_011 not in the Motif Atlas

Homologous match to J3_8C3A_054

Geometric discrepancy: 0.2

The information below is about J3_8C3A_054

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J3_16991.1

Basepair signature

cWW-F-cWW-F-F-cWW

Number of instances in this motif group

3

Unit IDs

7NRD|1|LA|C|1631
7NRD|1|LA|A|1632
*
7NRD|1|LA|U|1641
7NRD|1|LA|A|1642
7NRD|1|LA|A|1643
7NRD|1|LA|C|1644
7NRD|1|LA|U|1645
*
7NRD|1|LA|A|1810
7NRD|1|LA|G|1811

Current chains

Chain LA

25S rRNA (3184-MER)

Nearby chains

Chain Lb

60S ribosomal protein L27-A

Chain Li

60S ribosomal protein L34-A

Chain Lm

60S ribosomal protein L38