J3_7NRD_013
3D structure
- PDB id
- 7NRD (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Structure of the yeast Gcn1 bound to a colliding stalled 80S ribosome with MBF1, A/P-tRNA and P/E-tRNA
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 4.36 Å
Loop
- Sequence
- AGCU*ACGUUCUAGCAUUCAAG*UGAU
- Length
- 25 nucleotides
- Bulged bases
- 7NRD|1|LA|G|2549, 7NRD|1|LA|U|2550, 7NRD|1|LA|U|2551, 7NRD|1|LA|A|2554, 7NRD|1|LA|U|2558, 7NRD|1|LA|U|2559, 7NRD|1|LA|C|2560
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- J3_7NRD_013 not in the Motif Atlas
- Homologous match to J3_8P9A_060
- Geometric discrepancy: 0.1936
- The information below is about J3_8P9A_060
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- J3_76247.1
- Basepair signature
- cWW-F-tHH-F-tHS-cWW-cWW-F-F-F-F
- Number of instances in this motif group
- 2
Unit IDs
7NRD|1|LA|A|2529
7NRD|1|LA|G|2530
7NRD|1|LA|C|2531
7NRD|1|LA|U|2532
*
7NRD|1|LA|A|2547
7NRD|1|LA|C|2548
7NRD|1|LA|G|2549
7NRD|1|LA|U|2550
7NRD|1|LA|U|2551
7NRD|1|LA|C|2552
7NRD|1|LA|U|2553
7NRD|1|LA|A|2554
7NRD|1|LA|G|2555
7NRD|1|LA|C|2556
7NRD|1|LA|A|2557
7NRD|1|LA|U|2558
7NRD|1|LA|U|2559
7NRD|1|LA|C|2560
7NRD|1|LA|A|2561
7NRD|1|LA|A|2562
7NRD|1|LA|G|2563
*
7NRD|1|LA|U|2578
7NRD|1|LA|G|2579
7NRD|1|LA|A|2580
7NRD|1|LA|U|2581
Current chains
- Chain LA
- 25S rRNA (3184-MER)
Nearby chains
- Chain LD
- 60S ribosomal protein L2-A
- Chain LJ
- 60S ribosomal protein L8-A
- Chain LZ
- 60S ribosomal protein L25
- Chain Lb
- 60S ribosomal protein L27-A
- Chain Le
- 60S ribosomal protein L30
- Chain Li
- 60S ribosomal protein L34-A
- Chain Lr
- 60S ribosomal protein L43-A
- Chain SQ
- 40S ribosomal protein S1-A
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