J3_7NRD_014
3D structure
- PDB id
- 7NRD (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Structure of the yeast Gcn1 bound to a colliding stalled 80S ribosome with MBF1, A/P-tRNA and P/E-tRNA
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 4.36 Å
Loop
- Sequence
- CUC*GAA*UAAAAG
- Length
- 12 nucleotides
- Bulged bases
- 7NRD|1|LA|A|2703
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- J3_7NRD_014 not in the Motif Atlas
- Homologous match to J3_5TBW_013
- Geometric discrepancy: 0.14
- The information below is about J3_5TBW_013
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- J3_91491.5
- Basepair signature
- cWW-F-tWW-tHW-cWW-F-cWW
- Number of instances in this motif group
- 7
Unit IDs
7NRD|1|LA|C|2664
7NRD|1|LA|U|2665
7NRD|1|LA|C|2666
*
7NRD|1|LA|G|2690
7NRD|1|LA|A|2691
7NRD|1|LA|A|2692
*
7NRD|1|LA|U|2701
7NRD|1|LA|A|2702
7NRD|1|LA|A|2703
7NRD|1|LA|A|2704
7NRD|1|LA|A|2705
7NRD|1|LA|G|2706
Current chains
- Chain LA
- 25S rRNA (3184-MER)
Nearby chains
- Chain LB
- 5S ribosomal RNA; 5S rRNA
- Chain LG
- 60S ribosomal protein L5
- Chain LM
- 60S ribosomal protein L11-B
- Chain LV
- 60S ribosomal protein L21-A
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